Yeah, sort of. I just fixed the problem. I found another answer on this site. Thanks though. For anyone else with this problem try this. DE-INITIALIZATION PROCEDURE
De-initialization (un-learning) of the smart window motor clears the
memory of the module and shuts off the One-Touch UP, Bounce Back and Short Drop functions.
The smart window motors can be de-initialized in two (2) different ways:
Disconnect the battery cable from the battery WHILE THE WINDOW IS MOVING.
Remove the window motor fuse from the Power Distribution Box WHILE THE WINDOW IS MOVING.
After performing one of the above procedures, the smart motor must be re-initialized, see Initialization Procedure.
INITIALIZATION PROCEDURE
INITIALIZATION MUST BE PERFORMED WITH THE DOOR CLOSED! (For convertibles, top and the quarter glass must be in the up / closed position.)
From the window switch, perform the following steps without stopping:
Operate the window UP and stall for 2 seconds. (Hold The Switch)
Operate the window DOWN and stall for 2 seconds. (Hold The Switch)
The smart window motor will be initialized and one-touch-UP and Short Drop will be operational.
Cycle the window glass an additional five (5) times to set the window
"Soft Stop" for the down position. | 
