There is a TSB for this problem ref # 08-8-5
2005-07 Mustang with 4.0l w/ manual
trans
Transmission may exibit a rattle or knocking sound on light acceleration between 1800-2200 rpm around 45mph, it is most evident in 4th gear after engine/
trans has reached operating temerature. It has been describe as a helicopter noise, similar to when you put playing card in bicycle spokes. The noise has no effect on vehicle performance or durability.
There is a revised flywheel to correct this issue.
If your vehicle's build date is before 12/4 06 then the clutch disc and pressure plate must also be replaced.