The problem your having is that when an X-pipe is paired with any Chambered muffler (Flowmaster, Borla, Magnaflow, ect) creates a new exhuast note (that many people don't like). That is why the H-pipe or Prochamber are the prefered choice when using a chambered muffler. If you want to keep the X-pipe and get a more desired sound your going to need to switch to a straight thru muffler type.
Here are three different exhaust types, The white GT is basically what your car will sound like (with a little less rasp) if you either put the stock H-pipe back on or buy an after market one.
Here are some snips I took from
http://www.flowmastermufflers.com/ Do I need to install an "H" pipe to my dual exhaust?
Flowmaster strongly recommends using an "H" pipe, commonly known as a "balance tube" on all "true dual" exhaust systems. An "H" pipe equalizes the pressures between both banks of the engine giving a broader and flatter torque curve throughout the rpm range. It also eliminates "back-rap" common on deceleration, and creates a deeper mellower tone both inside and outside of the vehicle.
Is an "X" pipe better than and "H" pipe?
Over the years, Flowmaster's testing of all types of crossovers, including "X pipes", has revealed no substantial benefits over a properly installed "H" pipe on street driven applications. However, in race applications with small cubic inch engines and /or restricted (small bore) carburetors, will respond well to the addition of X pipes, tri-y styled collectors and/or properly designed single exhaust systems.
Anyway, I have the Mac O/R H-pipe and the Flowmaster 40's and I couldn't be happier it has a deep muscle car growl. The preformance difference between the X-pipe and H-pipe will be insignificant unless you are making ALOT of HP. If you really can't decide just go with the Mac Prochamber for the best of both worlds.
Oh and for the love of god, don't do anything to your exhaust tips or start welding in cats lol.