I had an issue with the flywheel that came with my AOD to T5 conversion kit, and what it turned out to be was the flywheel they supplied, they added additional weight to the flywheel, instead of being 50oz imbalanced, it was probably more like 60oz plus and when I would rev the engine in neutral or drive it, around 3500 RPM's it would vibrate.
I wonder if they added any weight to the flywheel after they resurfaced it, using those holes in the back of the flywheel. the only way to really tell is to pull the
tranny. Just a thought....