the security system syncs the IPC (instrument panel cluster), the SJB (smart junction box) and the ECM (engine control module) and allows the car to start. I bet all the lights are on in the dash and the little car with a key in it is on or flashing, right?
If so, tow it to Ford and have them force as-built data back onto the comps.
2014 Premium GT, SGM, Brembo, Auto, Tech, Comfort, etc. GT500s, Steeda UCA, VMP auto tune, 100 shot on BBR tune, best et: 11.38 at 120.85
2012 GT, Candy Red, Brembo, 3.73, Tech, Comfort, etc. Procal tune, Roush upper, UMI LCAs, Steeda red bracket, GT500s, 28X10X16 Hoosier slicks, best et: 11.91 at 115.23 RIP