I'm running a Lund tune with my procharger and I really like the way he tuned the transmission. the shifts are firm and the trasmission doesn't upshift as quickly as with the stock tune. AED is also supposed to be good but I have no experience with them.
2014 Mustang GT 6R80, Procharger Stage 2 D1SC, BBK 85mm TB, Boss IM, Sai Li fuel system. Circle D 3C, 1-7/8" Kooks Long Tubes w/Offroad X Pipe, Lethal Over-Axle Pipes, Corsa Quad Axle-Back, Eibach Pro System Plus, BMR K member, Shaftmasters DS, Forgestar CF-5 Wheels and Nitto NT05 tires. Lund Tuned
Lots of suspension goodies and some other stuff I can't remember.