The V8 C4 requires more clutches, which a trans guy can do. There are a few things that can differ for the Mustang too, primarily pay attention to the gear selector shaft on the driver side. It should be a flat, straight piece with a semi-circular end. If it's a "Z" shaped connector, it's for a column-shift car and that won't fit the Mustang gear shift connecting rod unless you do some mods to the rod itself. If it's not right, a trans guy can swap that out for you too. Also need to be sure it takes the proper type neutral safety switch.
In short, the internals are roughly the same, save for extra clutches for the V8, but the connections differ based on the car it came from. Good luck!