That seems like an expensive intake and I/C setup to me. When I bought my twinscrew Saleen kit, everything including the tune was $3550.
After you buy that intake:
You may have to upgrade the pulleys and dampener to an 8 rib setup
Then purchase the following:
fuel pump upgrade
Cobra blower
larger fuel injectors
all plumbing for the intercooler
Throttlebody and matching inlet hoses
Front mount heat exchanger and brackets
tune
intercooler reservoir and mounting hardware
In the end, you will spend about the same for what a turnkey kit would cost you.
IMO, I would rather go with a kit that will have some sort of warranty. The only part you will have with a warranty is the intercooler and intake.
Also the Cobra owner's are swapping out their roots style blowers for a reason, so if you do decide to go this route, buy an updated bolt in twin screw for the Cobra if you can find one cheap. Otherwise just buy a complete used Saleen Series IV or Kenne Bell 1.7 or larger kit.
Trust me, it is frustrating to build a kit piece by piece especially if it is for your daily driver.
What ever you do decide, post some pictures. :bigthumbsup